PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA08g11710
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C2H2
Protein Properties Length: 319aa    MW: 35250.9 Da    PI: 6.9565
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA08g11710genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.21.5e-0694115223
                 EETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                  C  Cgk F+r  nL+ H+r H
  CA08g11710  94 FCDFCGKGFKRDANLRMHMRAH 115
                 6*******************99 PP

2zf-C2H212.10.00061211227521
                 TTTEEESSHHHHHHHHH CS
     zf-C2H2   5 dCgksFsrksnLkrHir 21 
                  Cg+sFsrk+ L  H+ 
  CA08g11710 211 SCGTSFSRKDKLFGHMA 227
                 5**************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.52E-690116No hitNo description
Gene3DG3DSA:3.30.160.604.6E-693115IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.09293120IPR007087Zinc finger, C2H2
SMARTSM003550.002493115IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028095115IPR007087Zinc finger, C2H2
SMARTSM00355180142175IPR015880Zinc finger, C2H2-like
SMARTSM0035527180202IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.9E-4202227IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM00355210208232IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MNMVSDEITS AIHQIIVNGA SLLSSNQLTP PPPPSSQELK INPKSNHPEF DRRDIEDKVV  60
SESKVEVLDE GEGGSDWETI ELDAVELLAE HIHFCDFCGK GFKRDANLRM HMRAHGNQYK  120
TAEALSKPEK CRESSSNKRR RFSCPFVGCA RNKTHCKFRP LKSVICVKNH FKRSHCPKMY  180
SCTRCNKKNF SVLADLKSHL KHCGETKWKC SCGTSFSRKD KLFGHMALFE GHMPAVVGEM  240
AAAAALENGE EVGTDIFGGP GNGLLDVRTG SDNGFLDRLM LEGFESIDSY CFQDLLGSSS  300
PNGLNTVEDT LLDGSINF*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU9060291e-165GU906029.1 Capsicum chinense COSII marker COS78 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006367873.11e-173PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like
SwissprotQ9C8N52e-78STOP1_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1
TrEMBLM0ZV911e-173M0ZV91_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000088981e-173(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA100002126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.39e-75C2H2 family protein